Mark Borodovsky : rechercher sur Z-Library

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1

GENMARK: Parallel gene recognition for both DNA strands

Mark Borodovsky, James McIninch

Journal:

Computers & Chemistry

Année:

1993

Langue:

english

Fichier:

PDF, 890 KB

english, 1993

2

Consent insufficient for data release—Response

Sills, Jennifer, Amann, Rudolf I., Baichoo, Shakuntala, Blencowe, Benjamin J., Bork, Peer, Borodovsky, Mark, Brooksbank, Cath, Chain, Patrick S. G., Colwell, Rita R., Daffonchio, Daniele G., Danchin,

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2019

3

[WORLD SCIENTIFIC Proceedings of the 2nd International Conference - Florida, USA (4 – 7 June 1992)] Bioinformatics, Supercomputing and Complex Genome Analysis - PREDICTION OF GENE LOCATIONS USING DNA MARKOV CHAIN MODELS

Borodovsky, Mark, Mclninch, James

Année:

1993

Langue:

english

Fichier:

PDF, 1.71 MB

english, 1993

4

Probabilistic models for biological sequences: selection and Maximum Likelihood estimation

Ekisheva, Svetlana, Borodovsky, Mark

Journal:

International Journal of Bioinformatics Research and Applications

Année:

2006

Langue:

english

Fichier:

PDF, 286 KB

english, 2006

5

Deriving non-homogeneous DNA Markov chain models by cluster analysis algorithm minimizing multiple alignment entropy

Mark Borodovsky, Anatoly Peresetsky

Journal:

Computers & Chemistry

Année:

1994

Langue:

english

Fichier:

PDF, 783 KB

english, 1994

6

Recognition of genes in DNA sequence with ambiguities

Mark Borodovsky, James McIninch

Journal:

Année:

1993

Langue:

english

Fichier:

PDF, 554 KB

english, 1993

7

Control of Streptococcus pyogenes virulence: Modeling of the CovR/S signal transduction system

Alexander Y. Mitrophanov, Gordon Churchward, Mark Borodovsky

Journal:

Journal of Theoretical Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2007

8

Statistical analysis of genemark performance by cross-validation

Juergen Kleffe, Klaus Hermann, Mark Borodovsky

Journal:

Computers & Chemistry

Année:

1996

Langue:

english

Fichier:

PDF, 874 KB

english, 1996

9

Bacillus anthracisgenome organization in light of whole transcriptome sequencing

Jeffrey Martin, Wenhan Zhu, Karla D Passalacqua, Nicholas Bergman, Mark Borodovsky

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 3.86 MB

english, 2010

10

A novel genetic island of meningiticEscherichia coliK1 containing theibeAinvasion gene (GimA): functional annotation and carbon-source-regulated invasion of human brain microvascular endothelial cells

Sheng-He Huang, Yu-Hua Chen, Guoying Kong, Steven H. Chen, John Besemer, Mark Borodovsky, Ambrose Jong

Journal:

Functional & Integrative Genomics

Année:

2001

Langue:

english

Fichier:

PDF, 403 KB

english, 2001

11

Uniform Accuracy of the Maximum Likelihood Estimates for Probabilistic Models of Biological Sequences

Svetlana Ekisheva, Mark Borodovsky

Journal:

Methodology and Computing in Applied Probability

Année:

2011

Langue:

english

Fichier:

PDF, 371 KB

english, 2011

12

Platinum loss and migration in porous gas diffusion fuel cell electrodes as studied by Rutherford backscattering spectrometry

Lev Borodovsky, Jerome G. Beery, Mark Paffett

Journal:

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms

Année:

1987

Langue:

english

Fichier:

PDF, 457 KB

english, 1987

13

New genes in old sequence: a strategy for finding genes in the bacterial genome

Mark Borodovsky, Eugene V. Koonin, Kenneth E. Rudd

Journal:

Trends in Biochemical Sciences

Année:

1994

Langue:

english

Fichier:

PDF, 784 KB

english, 1994

14

`Small genomics' on a large scale

Mark Borodovsky

Journal:

Trends in Genetics

Année:

1998

Langue:

english

Fichier:

PDF, 135 KB

english, 1998

15

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli

Roman L. Tatusov, Arcady R. Mushegian, Peer Bork, Nigel P. Brown, William S. Hayes, Mark Borodovsky, Kenneth E. Rudd, Eugene V. Koonin

Journal:

Current Biology

Année:

1996

Langue:

english

Fichier:

PDF, 348 KB

english, 1996

16

Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

Zafer Aydin, Yucel Altunbasak, Mark Borodovsky

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 406 KB

english, 2006

17

2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

Jack Y Yang, Andrzej Niemierko, Ruzena Bajcsy, Dong Xu, Brian D Athey, Aidong Zhang, Okan K Ersoy, Guo-zheng Li, Mark Borodovsky, Joe C Zhang, Hamid R Arabnia, Youping Deng, A Keith Dunker, Yunlong Li

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 230 KB

english, 2010

18

Exonization of the LTR transposable elements in human genome

Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John McDonald

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 639 KB

english, 2007

19

Nucleosome DNA Sequence Pattern Revealed by Multiple Alignment of Experimentally Mapped Sequences

Ilya Ioshikhes, Alex Bolshoy, Konstantin Derenshteyn, Mark Borodovsky, Edward N. Trifonov

Journal:

Journal of Molecular Biology

Année:

1996

Langue:

english

Fichier:

PDF, 199 KB

english, 1996

20

Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum

Malgorzata M Slupska, Angela G King, Sorel Fitz-Gibbon, John Besemer, Mark Borodovsky, Jeffrey H Miller

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 306 KB

english, 2001

21

Identification of New Human Cadherin Genes Using a Combination of Protein Motif Search and Gene Finding Methods

Julia C. Höng, Nikolai V. Ivanov, Paul Hodor, Menghang Xia, Nan Wei, Richard Blevins, David Gerhold, Mark Borodovsky, Yuan Liu

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2004

22

Three New Isoforms of Caenorhabditis elegans UNC-89 Containing MLCK-like Protein Kinase Domains

Tracey M. Small, Kim M. Gernert, Denise B. Flaherty, Kristina B. Mercer, Mark Borodovsky, Guy M. Benian

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2004

23

Convergence rate estimation for the TKF91 model of biological sequence length evolution

Alexander Y. Mitrophanov, Mark Borodovsky

Journal:

Mathematical Biosciences

Année:

2007

Langue:

english

Fichier:

PDF, 337 KB

english, 2007

24

Titins in C. elegans with Unusual Features: Coiled-coil Domains, Novel Regulation of Kinase Activity and Two New Possible Elastic Regions

Denise B. Flaherty, Kim M. Gernert, Nataliya Shmeleva, Xuexin Tang, Kristina B. Mercer, Mark Borodovsky, Guy M. Benian

Journal:

Journal of Molecular Biology

Année:

2002

Langue:

english

Fichier:

PDF, 4.26 MB

english, 2002

25

Gene Identification and Classification in the Synechocystis Genomic Sequence by Recursive Gene Mark Analysis

Hirosawa, Makoto, Isono, Katsumi, Hayes, William S., Borodovsky, Mark

Journal:

Mitochondrial DNA

Année:

1997

Langue:

english

Fichier:

PDF, 950 KB

english, 1997

26

Evaluating the protein coding potential of exonized transposable element sequences

Jittima Piriyapongsa, Mark T Rutledge, Sanil Patel, Mark Borodovsky, I King Jordan

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2007

27

Benzodiazepine use during buprenorphine treatment for opioid dependence: Clinical and safety outcomes

Schuman-Olivier, Zev, Hoeppner, Bettina B., Weiss, Roger D., Borodovsky, Jacob, Shaffer, Howard J., Albanese, Mark J.

Journal:

Drug and Alcohol Dependence

Année:

2013

Langue:

english

Fichier:

PDF, 700 KB

english, 2013

28

GENETACK: FRAMESHIFT IDENTIFICATION IN PROTEIN-CODING SEQUENCES BY THE VITERBI ALGORITHM

ANTONOV, IVAN, BORODOVSKY, MARK

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2010

Langue:

english

Fichier:

PDF, 932 KB

english, 2010

29

Corrigendum to “Identification of New Human Cadherin Genes Using a Combination of Protein Motif Search and Gene Finding Methods” [J. Mol. Biol. 337 (2004) 307–317]

Hoeng, Julia C., Ivanov, Nikolai V., Hodor, Paul, Xia, Menghang, Wei, Nan, Blevins, Richard, Gerhold, David, Borodovsky, Mark, Liu, Yuan

Journal:

Journal of Molecular Biology

Année:

2014

Langue:

english

Fichier:

PDF, 169 KB

english, 2014

30

cag, a Pathogenicity Island of Helicobacter pylori, Encodes Type I-Specific and Disease-Associated Virulence Factors

Stefano Censini, Christina Lange, Zhaoying Xiang, Jean E. Crabtree, Paolo Ghiara, Mark Borodovsky, Rino Rappuoli and Antonello Covacci

Journal:

Proceedings of the National Academy of Sciences

Année:

1996

Langue:

english

Fichier:

PDF, 1019 KB

english, 1996

31

Emerging adult age status predicts poor buprenorphine treatment retention

Schuman-Olivier, Zev, Weiss, Roger D., Hoeppner, Bettina B., Borodovsky, Jacob, Albanese, Mark J.

Journal:

Journal of Substance Abuse Treatment

Année:

2014

Langue:

english

Fichier:

PDF, 637 KB

english, 2014

32

The Caenorhabditis elegans Gene unc-89, Required for Muscle M-Line Assembly, Encodes a Giant Modular Protein Composed of Ig and Signal Transduction Domains

Guy M. Benian, Tina L. Tinley, Xuexin Tang and Mark Borodovsky

Journal:

The Journal of Cell Biology

Année:

1996

Langue:

english

Fichier:

PDF, 4.75 MB

english, 1996

33

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - IEEE 7th BIBE Research Tutorial Lecture: Decoding Novel Genomes: From Microbiomes to the Eukaryota

Borodovsky, Mark

Année:

2007

Langue:

english

Fichier:

PDF, 326 KB

english, 2007

34

[IEEE 2009 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Washington, D.C., USA (2009.11.1-2009.11.4)] 2009 IEEE International Conference on Bioinformatics and Biomedicine - Assessment of Gene Annotation Accuracy by Inferring Transcripts from RNA-Seq

Martin, Jeffrey, Zhu, Wenhan, Bergman, Nicholas, Borodovsky, Mark

Année:

2009

Langue:

english

Fichier:

PDF, 467 KB

english, 2009

35

Linguistics of Nucleotide Sequences II: Stationary Words in Genetic Texts and the Zonal Structure of DNA

Pevzner, Pavel A., Borodovsky, Mark Yu, Mironov, Anrey A.

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

1989

Langue:

english

Fichier:

PDF, 628 KB

english, 1989

36

Comparison of equations describing the ranked frequency distributions of graphemes and phonemes*

Martindale, Colin, Gusein‐Zade, S. M., McKenzie, Dean, Borodovsky, Mark Yu.

Journal:

Journal of Quantitative Linguistics

Année:

1996

Langue:

english

Fichier:

PDF, 383 KB

english, 1996

37

Detection of new genes in a bacterial genome using Markov models for three gene classes

Borodovsky, Mark, Mclninch, James D., Koonin, Eugene V., Rudd, Kenneth E., Médigue, Claudine, Danchin, Antoine

Journal:

Nucleic Acids Research

Année:

1995

Langue:

english

Fichier:

PDF, 872 KB

english, 1995

38

An Improved Distribution of Codon Frequencies Allowing for Inhomogeneity of DNA's Primary-Structure Evolution

Gusein-Zade, Sabir M., Borodovsky, Mark Yu.

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

1990

Langue:

english

Fichier:

PDF, 583 KB

english, 1990

39

Linguistics of Nucleotide Sequences I: The Significance of Deviations from Mean Statistical Characteristics and Prediction of the Frequencies of Occurrence of Words

Pevzner, Pavel A., Borodovsky, Mark Yu., Mironov, Anrey A.

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

1989

Langue:

english

Fichier:

PDF, 606 KB

english, 1989

40

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 6053 || “Master-Slave” Biological Network Alignment

Borodovsky, Mark, Gogarten, Johann Peter, Przytycka, Teresa M., Rajasekaran, Sanguthevar

Année:

2010

Langue:

english

Fichier:

PDF, 338 KB

english, 2010

41

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroomCoprinopsis cinerea(Coprinus cinereus)

Jason E. Stajich, Sarah K. Wilke, Dag Ahrén, Chun Hang Au, Bruce W. Birren, Mark Borodovsky, Claire Burns, Björn Canbäck, Lorna A. Casselton, C.K. Cheng, Jixin Deng, Fred S. Dietrich, David C. Fargo,

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2010

42

Identification of protein coding regions in RNA transcripts

Tang, Shiyuyun, Lomsadze, Alexandre, Borodovsky, Mark

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 2.61 MB

english, 2015

43

Sensitivity of Hidden Markov Models

Alexander Yu. Mitrophanov, Alexandre Lomsadze and Mark Borodovsky

Journal:

Journal of Applied Probability

Année:

2005

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2005

44

The Vfl1 Protein in Chlamydomonas Localizes in a Rotationally Asymmetric Pattern at the Distal Ends of the Basal Bodies

Carolyn D. Silflow, Matthew LaVoie, Lai-Wa Tam, Susan Tousey, Mark Sanders, Wei-chien Wu, Mark Borodovsky and Paul A. Lefebvre

Journal:

The Journal of Cell Biology

Année:

2001

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2001

45

Frameshift detection in prokaryotic genomic sequences

Kislyuk, Andrey, Lomsadze, Alexandre, Lapidus, Alla L., Borodovsky, Mark

Journal:

International Journal of Bioinformatics Research and Applications

Année:

2009

Langue:

english

Fichier:

PDF, 674 KB

english, 2009

46

The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex

Guillaume Blanc, Garry Duncan, Irina Agarkova, Mark Borodovsky, James Gurnon, Alan Kuo, Erika Lindquist, Susan Lucas, Jasmyn Pangilinan, Juergen Polle, Asaf Salamov, Astrid Terry, Takashi Yamada, Davi

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2010

47

Dynamic Systems Models || Inverse Problem of Dynamics: The Algorithm for Identifying the Parameters of an Aircraft

Boguslavskiy, Josif A., Borodovsky, Mark

Année:

2016

Langue:

english

Fichier:

PDF, 146 KB

english, 2016

48

Dynamic Systems Models ||

Boguslavskiy, Josif A., Borodovsky, Mark

Année:

2016

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2016

49

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome

Borodovsky, Mark, Rudd, Kenneth E., Koonin, Eugene V.

Journal:

Nucleic Acids Research

Année:

1994

Langue:

english

Fichier:

PDF, 1.05 MB

english, 1994

50

NCBI prokaryotic genome annotation pipeline

Tatusova, Tatiana, DiCuccio, Michael, Badretdin, Azat, Chetvernin, Vyacheslav, Nawrocki, Eric P., Zaslavsky, Leonid, Lomsadze, Alexandre, Pruitt, Kim D., Borodovsky, Mark, Ostell, James

Journal:

Nucleic Acids Research

Année:

2016

Langue:

english

Fichier:

PDF, 2.71 MB

english, 2016